PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC002805.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 242aa MW: 26858.6 Da PI: 7.5847

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC002805.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H EcC002805.10 96 FECQYCFKEFANSQALGGHQNAH 118 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.66E-6	93	123	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-4	94	122	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.24	96	123	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MSRDQIAREV STSSNLLSLT WVSENGGSNG SCAEKKLKLF GFELNPPKND PTCSKLESPE 60 GDESVNSSNT VKEKSSARAT TDHHHQVDDE SHNKKFECQY CFKEFANSQA LGGHQNAHKK 120 ERLKKKRLQI QARKASLHQY LQPLQNNLHL FNFQGSASTS SSGSWFFYEP YSNSSDHQFT 180 LYDESQISFS PESRMFPLTC GERSGGSYHL PMDTAGSAGP KQISCKSLDL QLGLSVQSNI 240 PG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043824.1	1e-154	PREDICTED: zinc finger protein 5
TrEMBL	A0A059D5X4	1e-153	A0A059D5X4_EUCGR; Uncharacterized protein
STRING	XP_010043824.1	1e-153	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7325	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	4e-15	zinc finger protein 5