PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC002932.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 234aa    MW: 26781.8 Da    PI: 4.6933
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC002932.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-193083356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  +R++f++eq++ Le+ Fe+++ +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  EcC002932.10 30 NRRRFSDEQIRSLESIFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 83
                  699**************************************************9 PP
2HD-ZIP_I/II121.15.6e-3930121293
   HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   ++rr+s+eq+++LE+ Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE++++ L+++y++l ++ e+L+ke+++L +++++
  EcC002932.10  30 NRRRFSDEQIRSLESIFESESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREFAILRANYNTLCSQFESLKKEKQSLVTQIDK 121
                   589************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.1E-19887IPR009057Homeodomain-like
PROSITE profilePS5007117.6532585IPR001356Homeobox domain
SMARTSM003891.4E-162789IPR001356Homeobox domain
PfamPF000463.5E-173083IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-193090IPR009057Homeodomain-like
CDDcd000863.95E-163186No hitNo description
PRINTSPR000319.4E-65665IPR000047Helix-turn-helix motif
PROSITE patternPS0002706083IPR017970Homeobox, conserved site
PRINTSPR000319.4E-66581IPR000047Helix-turn-helix motif
PfamPF021834.2E-1485125IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MFSTGEYSAA AFEGMDSLPS PRTKKNQLVN RRRFSDEQIR SLESIFESES RLEPRKKLQL  60
ARELGLQPRQ VAIWFQNKRA RWKSKQLERE FAILRANYNT LCSQFESLKK EKQSLVTQID  120
KLNQLVEKPQ GEGQSCGHDL ATNSIDRESD NGVPKHEDSQ PVFPDKLTRL VGIPCEDDYF  180
GLEEEQSLLN MAEPDPEPAP ADSSLTSPEP WGSLETDDLL KQSSGSSQWW DFWS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054131.11e-165PREDICTED: homeobox-leucine zipper protein ATHB-12
SwissprotP468972e-61ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A059CKR81e-163A0A059CKR8_EUCGR; Uncharacterized protein
STRINGXP_010054131.11e-164(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24982874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-59homeobox 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]