PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC003038.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 231aa    MW: 25848.6 Da    PI: 5.9209
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC003038.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-13141185347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+++++ + + +G g+Wk+I++++   +t+ q+ s+ qky
     EcC003038.20 141 AWTKEEHQRFLGGLEIYGRGDWKSISKYVVMSKTPTQVASHAQKY 185
                      6*****************************999***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.93491IPR001005SANT/Myb domain
SuperFamilySSF466896.89E-53895IPR009057Homeodomain-like
PROSITE profilePS5129418.073134190IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-9134189IPR009057Homeodomain-like
SuperFamilySSF466894.52E-16136190IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-16137189IPR006447Myb domain, plants
SMARTSM007173.3E-9138188IPR001005SANT/Myb domain
PfamPF002491.9E-11141185IPR001005SANT/Myb domain
CDDcd001677.82E-9141186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0022891Molecular Functionsubstrate-specific transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MANAAFPTSA TFHQECTSVE RSPEVGYVGY ENDGFGIWTF EENKRFENAL ATLSGEIDLA  60
TLDRFVQGIA PEFPGKSVEQ VGRHLEALWH DVELIESAEV TFPEHWTVDE EGDSDGGPPR  120
VQKSKGKSKV EPKGERKRGI AWTKEEHQRF LGGLEIYGRG DWKSISKYVV MSKTPTQVAS  180
HAQKYFNRKD RTENQKLRRS INDTHNISNI GAIASMSSSP PSTRYPGETD A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030835.11e-168PREDICTED: transcription factor DIVARICATA
TrEMBLA0A059ARW31e-166A0A059ARW3_EUCGR; Uncharacterized protein
STRINGXP_010030835.11e-167(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.18e-37MYB family protein