PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC003157.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 568aa MW: 65156.9 Da PI: 8.558

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC003157.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.8	7.1e-13	2	62	27	89
FAR1 27 eitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +it + f Cs++g++++++ + + + +r trtgC+a++k + dg w+++k++leHnH+l EcC003157.10 2 TITGKYFLCSCQGHKSKKQIE-KPTLYKRRDTRTGCEANIKCVVS-DGMWKISKVVLEHNHSL 62 578899*********9999.99999**********9999.*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.6E-10	2	62	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-12	173	263	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.569	450	486	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.8E-4	461	488	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
DTITGKYFLC SCQGHKSKKQ IEKPTLYKRR DTRTGCEANI KCVVSDGMWK ISKVVLEHNH 60 SLEGCLTITH GRAEDSCATM THSTDKIVDE VRTVGEQALV SDVDSSDVSR GTWKIHPMLE 120 HKDTQDLIDH FKNRQVEDPS FFYTAQVKAA SGMANFFWRY SRSKIDYEHF GDVLVLDTRT 180 EIKKYGMICA VFWGLNNHRQ RIIFGCAFLV DQTMGSLNWL LWSFVEVSCH KPKTIITEVS 240 EEIADALRVV LPETAHCLQF WSILNGFKNL STLSDRASVG NLFRDCVFHV YSQVEFEFKW 300 NSFIGKYKLH ENRWFASLYG MREKWSHAFT RNVFSAGLIS IQNNEDARSI FGNLFCKTMT 360 LSQFAQQCEK MAEDMRRKEF LEDMRCEKIS ANLQSKNPVE KEAERLYTKP IFNMFQKELS 420 NILSLSIEEI GGKATLREFK LTEQGSMDIN TVKFDPSNST LVCSCGKFES VGILCFHALK 480 VLNFMNIFNI PSRYLLKRWT KSAKDSLALD SPRTGTARDG GPDNLFMGEF MRQALHVAYM 540 SVNKKRKRKA MAIMKSALED IAKVPKTE

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

DTITGKYFLC SCQGHKSKKQ IEKPTLYKRR DTRTGCEANI KCVVSDGMWK ISKVVLEHNH  60
SLEGCLTITH GRAEDSCATM THSTDKIVDE VRTVGEQALV SDVDSSDVSR GTWKIHPMLE  120
HKDTQDLIDH FKNRQVEDPS FFYTAQVKAA SGMANFFWRY SRSKIDYEHF GDVLVLDTRT  180
EIKKYGMICA VFWGLNNHRQ RIIFGCAFLV DQTMGSLNWL LWSFVEVSCH KPKTIITEVS  240
EEIADALRVV LPETAHCLQF WSILNGFKNL STLSDRASVG NLFRDCVFHV YSQVEFEFKW  300
NSFIGKYKLH ENRWFASLYG MREKWSHAFT RNVFSAGLIS IQNNEDARSI FGNLFCKTMT  360
LSQFAQQCEK MAEDMRRKEF LEDMRCEKIS ANLQSKNPVE KEAERLYTKP IFNMFQKELS  420
NILSLSIEEI GGKATLREFK LTEQGSMDIN TVKFDPSNST LVCSCGKFES VGILCFHALK  480
VLNFMNIFNI PSRYLLKRWT KSAKDSLALD SPRTGTARDG GPDNLFMGEF MRQALHVAYM  540
SVNKKRKRKA MAIMKSALED IAKVPKTE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	543	548	KKRKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010046141.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A059D3A4	0.0	A0A059D3A4_EUCGR; Uncharacterized protein
STRING	XP_010046141.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19171	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-65	FAR1-related sequence 5