PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC003298.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 166aa MW: 18989.1 Da PI: 10.4093

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC003298.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.7	2.2e-27	32	86	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWt+ LH++F+e+v++LGG+e A Pk il+lm+v+gLt+ h+kSHLQk R+ EcC003298.20 32 KRRIRWTQHLHNQFLECVNRLGGAETAKPKLILKLMDVEGLTIFHIKSHLQKCRI 86 68**************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.529	29	89	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-15	29	86	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-25	30	87	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.5E-20	32	87	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-6	36	84	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-12	122	161	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0003677	Molecular Function	DNA binding
GO:0016491	Molecular Function	oxidoreductase activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
LEKGPPVSRN EAKPDADPGG NSNSLAAATS SKRRIRWTQH LHNQFLECVN RLGGAETAKP 60 KLILKLMDVE GLTIFHIKSH LQKCRIAKCI AESREGKISA FTMMSPNEYS LGKLIAEDFC 120 KTLLMQLNVQ KRLLHQLEMQ RSLQMKIEEQ GRQLKRYLEQ RLHNKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-20	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-20	31	88	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021282747.1	6e-44	myb family transcription factor PHL5 isoform X2
Swissprot	Q0WVU3	4e-41	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A2R6QRS2	3e-44	A0A2R6QRS2_ACTCH; Myb family transcription factor
STRING	EOY09469	4e-43	(Theobroma cacao)
STRING	XP_009765655.1	2e-43	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	2e-43	G2-like family protein