PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC003387.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 139aa MW: 16075 Da PI: 4.6629

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC003387.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	55.8	1.4e-17	14	72	42	100
DUF260 42 vlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + ++lpe++r+da++s++yeA r+rdPvyG++g i++lq q++ql+a+la+ ++e EcC003387.10 14 TFRNFQTLPESQRDDAVTSMIYEASTRIRDPVYGCAGAISRLQMQISQLHAQLAKSQAE 72 56678999**********************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	11.261	1	73	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-15	17	70	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
HYLYEEQLID EGTTFRNFQT LPESQRDDAV TSMIYEASTR IRDPVYGCAG AISRLQMQIS 60 QLHAQLAKSQ AELISMQIQR ANLTEQLHMT KSQESLPQQS VKGLLNNPYD YQINSCLDDY 120 NGFGSFWEPL WTWLMGRAY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056894.1	8e-75	PREDICTED: LOB domain-containing protein 1
Swissprot	Q9LQR0	5e-29	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A2C9W1E6	2e-39	A0A2C9W1E6_MANES; Uncharacterized protein
STRING	XP_010056894.1	3e-74	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-31	LOB domain-containing protein 1