PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC003621.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 150aa MW: 16918.7 Da PI: 8.4642

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC003621.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.9	1e-14	50	133	2	93
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 +k ++ps+v+ +l l+ +f+++ ++k+ + +tl de+g+++ + rk++ l++GWk+F a++L +gD vvF+l++ ++++ EcC003621.10 50 VKSMLPSHVSGGFWLGLSVQFCKSS-LPKNDG-VITLVDEDGEEFPTIYLARKTG----LSGGWKGFSVAHELTDGDAVVFQLIKP--TTMK 133 6899****************766.555444.8***********656665....*********************9973..3333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.9E-18	41	138	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.18E-21	42	138	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.18E-22	47	134	No hit	No description
SMART	SM01019	8.8E-18	49	141	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.56	49	140	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.4E-13	50	134	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
ITKLFMKIDR IFKRRDPLNL VYASAEAREY ALEKAEQLQS TLEPQYPTLV KSMLPSHVSG 60 GFWLGLSVQF CKSSLPKNDG VITLVDEDGE EFPTIYLARK TGLSGGWKGF SVAHELTDGD 120 AVVFQLIKPT TMKVVMMRLH MRLEIHFLAS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061766.1	3e-90	PREDICTED: B3 domain-containing protein At5g42700 isoform X2
Swissprot	Q9FMZ4	6e-52	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A059BSX9	7e-89	A0A059BSX9_EUCGR; Uncharacterized protein
STRING	XP_010061764.1	4e-87	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3744	27	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-54	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]