PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC003705.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 118aa    MW: 13336 Da    PI: 9.9595
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC003705.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.5e-193164134
          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                  C++C +t++p+WR gp g+ktLCnaCG++y+  +
  EcC003705.30 31 CVHCAATESPMWRLGPMGPKTLCNACGIRYKTGR 64
                  *******************************887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-152575IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4792561IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-152687No hitNo description
Gene3DG3DSA:3.30.50.102.5E-152963IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.55E-133077No hitNo description
PfamPF003201.6E-163164IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0022857Molecular Functiontransmembrane transporter activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
SSLQEKPQDP AKRRRKEEDQ SPQQPNQPRR CVHCAATESP MWRLGPMGPK TLCNACGIRY  60
KTGRLFPEYR PSASPTYVPS LHSHFHKKVI RIREATNGED TEVAANAQRP SQLGNIES
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018719792.14e-83PREDICTED: GATA transcription factor 8-like
SwissprotQ9SV308e-32GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A484N6A96e-34A0A484N6A9_9ASTE; Uncharacterized protein
STRINGXP_010046437.16e-83(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-34GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]