PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC003785.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 333aa    MW: 36723.2 Da    PI: 9.7349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC003785.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.6e-20150198355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+g
  EcC003785.30 150 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAALAYDTAAYMLRG 198
                   8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-30148208No hitNo description
SMARTSM003801.6E-35149212IPR001471AP2/ERF domain
PROSITE profilePS5103222.405149206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-31149207IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23149207IPR016177DNA-binding domain
PRINTSPR003675.4E-11150161IPR001471AP2/ERF domain
PfamPF008479.6E-14150198IPR001471AP2/ERF domain
PRINTSPR003675.4E-11172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MFPFKAFLNP LAKITAPNPP SPSSQGSSSS TSRVPSDLTL SWQEPEKKTP STMDLLGMDT  60
ISESMASSTN NHLTQHGYVL WRPGSDWPST DRSLDHLSDR SSSRGPGDSC YWLGNTKIQP  120
MKYTVRRSMA SKKEHRSTSS SSISSSGKLF RGVRQRHWGK WVAEIRLPRN RTRVWLGTFD  180
TAEEAALAYD TAAYMLRGDF AHLNFPDLKH ELVKGNRSLN STTAALLEAK IRTISQGASS  240
RKKLHGGSPP KSVTNKEEFA SESPSTSSPK DPMGSEWQLE FEARVVGSEM MSMSKKTQEA  300
VVSASADADA VQLSRMPSLD MEMIWDAILV SDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19145206163ATERF1
3gcc_A3e-19145206163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023704.10.0PREDICTED: ethylene-responsive transcription factor ERF062
TrEMBLA0A059B1Q50.0A0A059B1Q5_EUCGR; Uncharacterized protein
STRINGXP_010023704.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.18e-38ERF family protein