PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC003968.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 154aa MW: 17545.7 Da PI: 5.8377

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC003968.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	31.4	2.4e-10	1	35	16	50
HHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 16 RrngilKKAeELSvLCdaevaviifsstgklyeys 50 Rr gi K A+EL +LC aev v+++s++gk + ++ EcC003968.10 1 RRSGIYKIASELVTLCRAEVGVVVLSPSGKPFSFA 35 9****************************977765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	3.27E-13	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.0052	1	37	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.8E-12	1	34	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.862	1	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
RRSGIYKIAS ELVTLCRAEV GVVVLSPSGK PFSFAHPSID TVANQFLNRN PPPIDGSYAL 60 VESNRQARIN ELNQQYDELI NQIKVEEARN KALKQLTEGK GNDAWWEAPI EELNLEELHQ 120 LEVRMEDLRR TLWMSINQRT RGKESKSIQG QSSD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010059071.1	1e-105	PREDICTED: agamous-like MADS-box protein AGL62
TrEMBL	A0A059C798	1e-104	A0A059C798_EUCGR; Uncharacterized protein
STRING	XP_010059074.1	1e-108	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	8e-26	AGAMOUS-like 62