PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC004055.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 167aa    MW: 19106.3 Da    PI: 8.8606
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC004055.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.41.2e-10234133
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCda 33
                  krien+  r vtfsk +  i  KA+EL +LC+ 
  EcC004055.10  2 KRIENEGSRPVTFSKHKSSIYRKASELVTLCGP 34
                  79*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0023150IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.526135IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-12171IPR002100Transcription factor, MADS-box
PfamPF003191.5E-10334IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MKRIENEGSR PVTFSKHKSS IYRKASELVT LCGPKECSLS AGNPFCFAHP SIDTVANQFL  60
NQNPLSHDRS HAFIESYNQV QIDEHNQQYD ELVNQIKSEK TQGKVLKRLT EGKSHGAWWE  120
APIEELNLKE LNQRMAQMED LRQSLRRSTN QRNRGEASTS FQGRSSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059071.18e-71PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A059C7K61e-99A0A059C7K6_EUCGR; Uncharacterized protein
STRINGXP_010059071.13e-70(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-25AGAMOUS-like 62