PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC004408.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 253aa MW: 28366.5 Da PI: 8.6331

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC004408.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.8	4.6e-14	73	125	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR+++N +++Lr+llP a + kKls +++ +A +YI ++q EcC004408.10 73 KKLSHNASERDRRKKMNGLYSTLRSLLPAA--DRMKKLSIPTMVSRALKYIPEMQ 125 6789***********************6..49999************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.221	72	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.01E-15	73	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-11	73	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.39E-14	73	129	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-14	73	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-10	78	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MLSFSPSGWP LEDSTSHEQW SHMHRDAYTC YSPPLLRFPF SSPPTLSPPA DLALDPLDVP 60 FGGAKGEEAT MVKKLSHNAS ERDRRKKMNG LYSTLRSLLP AADRMKKLSI PTMVSRALKY 120 IPEMQQQVEK LTQEKEKLLS RINASRDGDY YTSHQEISRG KGSLQILVPS ISTTRLSESE 180 VAIQISTRKA MTHKTVDFFE VLLALDYLGF PVISSSTFES CGGMKTTFYN LHVQVVGEIL 240 VKSFEVDKTF PSV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036348.1	1e-157	PREDICTED: transcription factor ORG2
TrEMBL	A0A059D2E5	1e-105	A0A059D2E5_EUCGR; Uncharacterized protein
STRING	XP_010036348.1	1e-156	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM482	28	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	1e-40	bHLH family protein