PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC004519.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25745 Da    PI: 10.1523
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC004519.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.91.5e-24959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  k+i+n + r  tfskRr g++KKA+ELSvLCda+v++iif  tgklye+ss
  EcC004519.10  9 KKIDNVMARRATFSKRRRGLIKKAQELSVLCDADVSLIIFPATGKLYEFSS 59
                  689**********************************************96 PP
2K-box24.11.5e-09871751597
         K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq...ieelqkk...ekelqeenkaLrkk 97 
                   ++ + +l+ L+ke++    ++R+++GedLe+L ++ L+qLe++Le +l+ + ++    l++      +++k+   e +l +enk+L++k
  EcC004519.10  87 QKDRSNLEMLRKEVNDKAYKLRQMKGEDLERLHVEGLRQLEKKLEAGLSLVIKTEVSSLTSIhsvFIRTKKRvplEAQLIKENKQLKQK 175
                   56667788899999999999*****************************9977766665543111122333223356666777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-33160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.665161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-29274IPR002100Transcription factor, MADS-box
CDDcd002658.23E-34269No hitNo description
PRINTSPR004042.8E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.7E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.43586182IPR002487Transcription factor, K-box
PfamPF014861.1E-890176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGREKIKIKK IDNVMARRAT FSKRRRGLIK KAQELSVLCD ADVSLIIFPA TGKLYEFSSS  60
SMEDTLTRYV LHSNIVEKPV QPCLSLQKDR SNLEMLRKEV NDKAYKLRQM KGEDLERLHV  120
EGLRQLEKKL EAGLSLVIKT EVSSLTSIHS VFIRTKKRVP LEAQLIKENK QLKQKMILHR  180
GKSVIVNSED NNVVLEVEDV LLELVNNVAV GSSSVAPLDD DRSHPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-18173173MEF2C
5f28_B3e-18173173MEF2C
5f28_C3e-18173173MEF2C
5f28_D3e-18173173MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018731854.11e-137PREDICTED: MADS-box protein SVP isoform X2
RefseqXP_018731855.11e-137PREDICTED: MADS-box protein SVP isoform X2
TrEMBLA0A059BRD81e-136A0A059BRD8_EUCGR; Uncharacterized protein
STRINGXP_010061535.11e-137(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-53MIKC_MADS family protein