PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC004614.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB

Protein Properties

Length: 252aa MW: 29274.9 Da PI: 10.5352

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC004614.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.3e-17	9	56	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+ ++ + g++R++k+c++rw++yl EcC004614.20 9 KGAWTEEEDVLLKKCVEKYGEGNWHQVPCRAGLNRCRKSCRLRWLNYL 56 79********************************************97 PP
2	Myb_DNA-binding	46.1	1.1e-14	62	106	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E + +++++k+lG++ W++Ia +++ gRt++++k++w+++ EcC004614.20 62 RGAFQEDEVDMIIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTH 106 8999****************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	24.943	4	60	IPR017930	Myb domain
SuperFamily	SSF46689	1.91E-29	6	103	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.0E-22	7	59	IPR009057	Homeodomain-like
SMART	SM00717	6.2E-15	8	58	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-16	9	56	IPR001005	SANT/Myb domain
CDD	cd00167	1.93E-10	11	56	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.0E-23	60	111	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.219	61	111	IPR017930	Myb domain
SMART	SM00717	1.5E-13	61	109	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-13	62	106	IPR001005	SANT/Myb domain
CDD	cd00167	4.86E-9	67	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MKGAIGVRKG AWTEEEDVLL KKCVEKYGEG NWHQVPCRAG LNRCRKSCRL RWLNYLKPNI 60 KRGAFQEDEV DMIIRLHKLL GNRWSLIAGR LPGRTANDVK NYWNTHVAKK VDHHKSKEDN 120 HPGKCATKVS VIRPRPWTFT KXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 180 XXXXXXXXXX XXXXXXXXXX XXXXXXXXRD SSPQEVEGKD SQRRTCGLGN LLWERDKMVG 240 TSSHAMLTFG NF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-24	3	112	1	109	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010062250.1	1e-100	PREDICTED: transcription factor MYB113
Swissprot	Q9FNV9	4e-64	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A059BTP4	6e-99	A0A059BTP4_EUCGR; Uncharacterized protein
STRING	XP_010062250.1	1e-99	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	1e-66	myb domain protein 113

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]