PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC004626.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 216aa    MW: 23607.9 Da    PI: 10.7645
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC004626.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-13133178247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+  ++ + + lG+g+W+ I++++  +Rt+ q+ s+ qky
     EcC004626.10 133 LPWTEEEHRTFLVGLETLGKGDWRGISKKFVGTRTPTQVASHAQKY 178
                      69****************************99*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.497127183IPR017930Myb domain
SuperFamilySSF466891.64E-18128184IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-17130182IPR006447Myb domain, plants
SMARTSM007175.8E-10131181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-10133178IPR009057Homeodomain-like
CDDcd001672.85E-10134179No hitNo description
PfamPF002491.3E-11134178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRKCSHCGF MGHNSRTCAS IRRRDASFGG GGGGRVKLFG VQLEAAYPCG VASRLPLKKS  60
LSMDCLMPSV RVLTSSSPLS SATNSSLSLR AACDVGDRLL RDESANKAAN SPSNDGYASD  120
GFLGRAQERK KGLPWTEEEH RTFLVGLETL GKGDWRGISK KFVGTRTPTQ VASHAQKYFL  180
RQKSLLPRRN KRRPSLFDVT HLDPPQALSK LEEKLN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049179.21e-139PREDICTED: protein REVEILLE 6
RefseqXP_010052392.11e-139PREDICTED: protein REVEILLE 5
TrEMBLA0A059CD271e-138A0A059CD27_EUCGR; Uncharacterized protein
STRINGXP_010049179.11e-153(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54962747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.18e-47MYB_related family protein