PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC004675.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

ZF-HD

Protein Properties

Length: 102aa MW: 11424 Da PI: 6.6508

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC004675.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	66.3	5.6e-21	40	92	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +++Y +ClkNh +slG +a+DGC Efmp +egt++ ++C AC CH nF +e EcC004675.20 40 NFQYFKCLKNHSVSLGNYAIDGCAEFMPR--DEGTPEFFQCIACCCHLNFNWKEI 92 689***********************9..779**************98886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	5.0E-11	38	92	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.9E-18	41	91	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.2E-17	42	91	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	18.737	43	91	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
QPKPRIDHLL QPSIPTSSPP SVEFHKITAS TQAMPLRVAN FQYFKCLKNH SVSLGNYAID 60 GCAEFMPRDE GTPEFFQCIA CCCHLNFNWK EIIAHGGSEL ES

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018715486.1	4e-43	PREDICTED: zinc-finger homeodomain protein 6-like
Swissprot	Q9SB61	4e-14	ZHD2_ARATH; Zinc-finger homeodomain protein 2
STRING	XP_010026173.1	8e-43	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-16	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]