PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC004877.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 141aa    MW: 16527.8 Da    PI: 10.0513
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC004877.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM117.51.3e-3661361127
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                   lp+GfrF+Ptd+elv++yLk   +++    e++i+evd++++ PwdLp       ++k++ +ew+fF + ++ky+++++++ + + g Wk tgk ++
  EcC004877.10   6 LPVGFRFRPTDDELVNQYLKTLGNETV---EQIIPEVDVHQLPPWDLPVkinelsRIKSDGDEWFFFGRLQNKYPQSNQARMTNDYGSWKPTGKPHK 99 
                   79*****************86443333...368***************54788877777889*************98777778889*********** PP

           NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                   + ++ ++++ glkk+Lvf k ++pk  +t+Wv+hey 
  EcC004877.10 100 IRTQdRKNTLGLKKILVFKKRQSPKNAHTKWVLHEYG 136
                   *99977888***************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-354140IPR003441NAC domain
PROSITE profilePS5100537.9616141IPR003441NAC domain
PfamPF023656.0E-207136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
TSLVDLPVGF RFRPTDDELV NQYLKTLGNE TVEQIIPEVD VHQLPPWDLP VKINELSRIK  60
SDGDEWFFFG RLQNKYPQSN QARMTNDYGS WKPTGKPHKI RTQDRKNTLG LKKILVFKKR  120
QSPKNAHTKW VLHEYGILND Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-26413513138Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064391.11e-89PREDICTED: protein NTM1-like 9
RefseqXP_010064501.11e-89PREDICTED: protein NTM1-like 9
RefseqXP_018725712.11e-89PREDICTED: protein NTM1-like 9
TrEMBLA0A059DC643e-88A0A059DC64_EUCGR; Uncharacterized protein
STRINGXP_010064391.15e-89(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.19e-36NAC transcription factor-like 9