PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC004877.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 213aa    MW: 24466.7 Da    PI: 10.4942
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC004877.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.81.1e-193111247128
           NAM  47 LpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   L  ++k++ +ew+fFs+ ++ky+++kr++r+ + g  k+tgk++++ ++ ++++ glkk+Lvf k ++pk  +t+Wv+hey++
  EcC004877.30  31 LS-RIKSDGDEWFFFSCLQNKYPQSKRARRTNDYGSRKSTGKTHKIRTQdRKNTLGLKKILVFKKLESPKNAHTKWVLHEYSI 112
                   53.7788899*************************************9977888***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.1271127IPR003441NAC domain
PfamPF023654.0E-922112IPR003441NAC domain
SuperFamilySSF1019411.22E-1834125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MVGPFYAFWD SVSVGLHQQF EDFLLRKYAE LSRIKSDGDE WFFFSCLQNK YPQSKRARRT  60
NDYGSRKSTG KTHKIRTQDR KNTLGLKKIL VFKKLESPKN AHTKWVLHEY SILNDQSDFI  120
LYRLKKNPDE NGKKNSKTQK TDTGISIVPQ GGSRSSPNLS DEVNNRSIPI MPQEGSRSRP  180
NTPDESKNTS CSNTLVIAKS IIPEEIPKIR RSI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064391.11e-107PREDICTED: protein NTM1-like 9
RefseqXP_010064501.11e-107PREDICTED: protein NTM1-like 9
RefseqXP_018725712.11e-107PREDICTED: protein NTM1-like 9
TrEMBLA0A059DC641e-106A0A059DC64_EUCGR; Uncharacterized protein
STRINGXP_010064391.11e-107(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3400222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.22e-19NAC transcription factor-like 9