PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC004939.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 214aa MW: 25137.5 Da PI: 7.1895

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC004939.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	82.9	6.3e-26	24	147	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgy.Wkatgkdke 91 +G+ F+Pt+eel+ +yLk v g + ++ +i+++ ++y+++PwdLp+ v ++++ew+f ++++++ +r++r+t g+ W+ tgk ++ EcC004939.10 24 AGYGFRPTEEELI-NYLKSAVPGWRESF-CIIPTLeNVYRIDPWDLPAkfnensIVPSSDQEWWFICPQAQN----QRNTRKTPCGFsWNITGKPRD 114 799********.9******888.66887779******63555544444899***8775....588999999988***** PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++k + ++g k+tLvf +g+ t+Wv+hey+l EcC004939.10 115 ITAKnDVDKIGSKRTLVFQ-----DGVPTNWVIHEYHL 147 9855667*******8.....7899******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-28	20	163	IPR003441	NAC domain
PROSITE profile	PS51005	28.725	22	164	IPR003441	NAC domain
Pfam	PF02365	8.2E-16	24	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
METRIHPMNF EVKEIALLLQ QKVAGYGFRP TEEELINYLK SAVPGWRESF CIIPTLENVY 60 RIDPWDLPAK FNENSIVPSS DQEWWFICPQ AQNQRNTRKT PCGFSWNITG KPRDITAKND 120 VDKIGSKRTL VFQDGVPTNW VIHEYHLPDH HFNSNYVLCH LKRRRNEEAD NLAYLESYLH 180 QPDHEDSFAE VRRKICSVYT LNVCLNKRLK CVSD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-12	25	166	20	167	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-12	25	166	20	167	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-12	25	166	20	167	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-12	25	166	20	167	NO APICAL MERISTEM PROTEIN
3swm_A	3e-12	25	166	23	170	NAC domain-containing protein 19
3swm_B	3e-12	25	166	23	170	NAC domain-containing protein 19
3swm_C	3e-12	25	166	23	170	NAC domain-containing protein 19
3swm_D	3e-12	25	166	23	170	NAC domain-containing protein 19
3swp_A	3e-12	25	166	23	170	NAC domain-containing protein 19
3swp_B	3e-12	25	166	23	170	NAC domain-containing protein 19
3swp_C	3e-12	25	166	23	170	NAC domain-containing protein 19
3swp_D	3e-12	25	166	23	170	NAC domain-containing protein 19
4dul_A	3e-12	25	166	20	167	NAC domain-containing protein 19
4dul_B	3e-12	25	166	20	167	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010065761.1	1e-140	PREDICTED: uncharacterized protein LOC104452959 isoform X1
TrEMBL	A0A059BC20	1e-138	A0A059BC20_EUCGR; Uncharacterized protein
STRING	XP_010065761.1	1e-139	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM27787	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	3e-26	NAC domain containing protein 89