PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC005170.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 112aa    MW: 12775.9 Da    PI: 8.6601
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC005170.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.17.2e-231370259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                  +Dgy+W+KYGqK +++    rsYY+C  a+C++kk+ e s+++p  + ++Yeg Hnh+
  EcC005170.20 13 QDGYEWKKYGQKFIRNIGKFRSYYKCQRAECNAKKRAEWSETEPGDLRVVYEGVHNHS 70
                  7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-23570IPR003657WRKY domain
PROSITE profilePS5081120.048772IPR003657WRKY domain
SuperFamilySSF1182901.16E-21870IPR003657WRKY domain
SMARTSM007741.4E-191271IPR003657WRKY domain
PfamPF031067.1E-201369IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0009570Cellular Componentchloroplast stroma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004252Molecular Functionserine-type endopeptidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MDREASSRLQ LPQDGYEWKK YGQKFIRNIG KFRSYYKCQR AECNAKKRAE WSETEPGDLR  60
VVYEGVHNHS SSLQDQSGSS QSGASSTSAN QYNLLNQVFG DNPPSDYRRS GD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-14469974Probable WRKY transcription factor 4
2lex_A5e-14469974Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075800.12e-42probable WRKY transcription factor 45
TrEMBLA0A059AF132e-77A0A059AF13_EUCGR; Uncharacterized protein
STRINGXP_006488951.13e-37(Citrus sinensis)
STRINGXP_006445572.13e-37(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2398844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-15WRKY DNA-binding protein 23