PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC005220.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 252aa    MW: 27724.1 Da    PI: 6.3952
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC005220.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.2e-08159199954
                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  EcC005220.20 159 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYMKFL 199
                   699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.478150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13151208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-14154208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-14156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-6160199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-6173204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006629Biological Processlipid metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDNIDELNSS ATPNQLDLLM TMHMEKPPEF YDGMCREFAN LRPTGFGGGA CASNTTDMDN  60
VVSSFTDNST SVSPHFITPY SFQNLPPPFS TPFLLHQSTP QAPPQSAAPN SSQAPSMEAM  120
REMIFRIAAM QPVHIDPESV KPLRRRNVRI SKDPQSVAAR HRRERISERI RILQRLVPGG  180
TKMDTASMLD EAIHYMKFLK DQVQSLERAS LDSSGGARNG AKFPVAGSDG NYSAPAYQLS  240
HCDANSGYGD DV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064182.10.0PREDICTED: transcription factor HEC2
TrEMBLA0A059BJY21e-124A0A059BJY2_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010064182.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.11e-40bHLH family protein