PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC006049.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 317aa MW: 34878.6 Da PI: 6.3897

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC006049.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.4e-05	251	273	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ + L H++ H EcC006049.10 251 YVCTLCNMSFPTGYALGGHMSGH 273 9*******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.4E-7	251	273	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.556	251	278	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	253	273	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MCLTGLERYL TISLHLLEIH GSVLPTMEAQ ANCPRGLRVG NLLPIMPDPT QRAFEFPNNI 60 QTTYSPNRFI LPQFSFYNPV AFGSSLSPDV ESNALILVNN QVHASYLISD SSRVFEPSFS 120 MVDVSGLISL LGDMTNLQYC FEPFNGSIYR INRHPYGDRN GLTSFLDNAG PHCALVIEPF 180 RVGILPSSLY APEFIPMRSQ QVPLDTEVAT QVLGFRGTAG FMSNNSWLRN SQEDLLRMRG 240 STPQSNFPRN YVCTLCNMSF PTGYALGGHM SGHARKRKLE ALLNATENLQ PGAGGSSPEA 300 ATSQGFENAS VVKVEFP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_010044974.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	7e-06	salt tolerance zinc finger