PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC006051.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 139aa MW: 15710.7 Da PI: 9.6416

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC006051.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.4	2.9e-07	57	101	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT + + +a +++ ++ +W+ +ar +g +++++++k r+ EcC006051.20 57 SWTSTQNKMFERALALYDKDtpdRWHNVARAVGGNKSAEEVKRRY 101 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.481	50	105	IPR017877	Myb-like domain
SMART	SM00717	9.6E-7	54	107	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.28E-11	56	113	IPR009057	Homeodomain-like
CDD	cd00167	2.39E-4	64	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
MPKYIMIREP HLAAEPYPRP PGDVLSSPQR IQDDNNLAQK PEIRKMASSS LSHSSSSWTS 60 TQNKMFERAL ALYDKDTPDR WHNVARAVGG NKSAEEVKRR YDMLVQDVMS IESGQVPLPK 120 YRASSASYGT SRAMAEEQR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	2e-26	49	130	2	82	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010060956.1	5e-53	PREDICTED: protein RADIALIS-like 3
Swissprot	Q1A173	1e-33	RADL6_ARATH; Protein RADIALIS-like 6
TrEMBL	A0A059BQ46	1e-51	A0A059BQ46_EUCGR; Uncharacterized protein
STRING	XP_010060956.1	2e-52	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.2	3e-32	RAD-like 6