PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC006129.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 129aa    MW: 13294.6 Da    PI: 4.3141
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC006129.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS46.46.5e-1574126355
          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 
                    lLl+cAe+v+ ++l+ a+ lL ++s l+sp g++ +R+aayf+ AL+ar+++
  EcC006129.20  74 GLLLQCAECVAMDNLADANDLLPEISVLSSPFGSSPERVAAYFAHALQARVVS 126
                   58*************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.70546129IPR005202Transcription factor GRAS
PfamPF035142.3E-1274126IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
KTKRPDRDRD LPGAGAGAGS PSSGDDRPSS SKRTHFSGGD DATVSGEKAA AEEAELEPQP  60
PADEGEGSGL RLLGLLLQCA ECVAMDNLAD ANDLLPEISV LSSPFGSSPE RVAAYFAHAL  120
QARVVSSFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-13781292576Protein SCARECROW
5b3h_A7e-13781292475Protein SCARECROW
5b3h_D7e-13781292475Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044705.16e-53PREDICTED: scarecrow-like protein 23
TrEMBLA0A059DD901e-51A0A059DD90_EUCGR; Uncharacterized protein
STRINGXP_010044705.12e-52(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.15e-18GRAS family protein