PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC006223.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 398aa    MW: 45174.4 Da    PI: 5.3451
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC006223.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1674.8e-2160142290
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   fY+ YAke GF vr+s++ ++ + +e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k  ++++ +w+++++eleHnH ++
  EcC006223.20  60 FYSCYAKEHGFGVRVSNTWYR-KCKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFLLMDNTRWRIIEVELEHNHLIS 142
                   9****************9998.56669**************99888.....***********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-1860142IPR004330FAR1 DNA binding domain
PfamPF105517.5E-22262348IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006281Biological ProcessDNA repair
GO:0005730Cellular Componentnucleolus
GO:0030896Cellular Componentcheckpoint clamp complex
GO:0003824Molecular Functioncatalytic activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDEVSLNAEP VGDDEAEELE IEGDYANTGL VGQTSVIQGE NPMPPAVGME FESYEDVYYF  60
YSCYAKEHGF GVRVSNTWYR KCKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
LLMDNTRWRI IEVELEHNHL ISPISGKFFK SHKVMGVGTK RPLESEGPEE VETVKLFQTV  180
IIDAEGGKLA ADDGDLRKNS DLSNKMKLRQ GDAQAALDFF CQMQLMDPNF FYVADLNERG  240
CLRNLFWAAA RSRVAYRYFG DVVAIDTTFF GQEFDNLLVS FIGVNHHGQP VLLGCGLLAG  300
ETVESYVWLL RAWLTCILGH PPQTIISDQC KALQAAIFDV FPRASHCMDL TKVMRRISER  360
LEKTYQYETI KAAIYRAVCL SQRAEEFEAA WMDIIHEH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033973.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A059AIH50.0A0A059AIH5_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010033973.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-112FAR1-related sequence 6