PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC006223.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 667aa    MW: 76789.3 Da    PI: 5.9021
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC006223.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.77e-2260142290
          FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   fY+ YAke GF vr+s++ ++ +++e ++ ++ Cs  g++++++ +     r+r+etrtgC a++k +++++ +w+++++eleHnH ++
  EcC006223.40  60 FYSCYAKEHGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDNMRWRIIEVELEHNHLIS 142
                   9***************99997.66779**************99888.....***********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1860142IPR004330FAR1 DNA binding domain
PfamPF105514.5E-22262349IPR018289MULE transposase domain
PfamPF044348.2E-5537581IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.161549585IPR007527Zinc finger, SWIM-type
SMARTSM005754.7E-4560587IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006281Biological ProcessDNA repair
GO:0005730Cellular Componentnucleolus
GO:0030896Cellular Componentcheckpoint clamp complex
GO:0003824Molecular Functioncatalytic activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MDEVSLNAEP VGDDEAEELE IEGDSAMTGL VGQTSVIQGE NPMPPAVGME FESYEDVYYF  60
YSCYAKEHGF GVRVSNTWYR KSKERYRGKL SCSSAGFKKK SEANRPRPET RTGCPAMIKF  120
RLMDNMRWRI IEVELEHNHL ISPTSGKFFK SHKVMGVGTK RPLELEGPEE VETVKLFQTV  180
IIDAEGGKLA ADDGDLRKNP DLSNKMKLRK GDAQAALDFF CQMQLMDPNF FYVADLNERG  240
YLRNLFWAAT RSRVAYHYFG DVVAIDTTFF GQEFDILLVS FIGVNHHGQP VLLGCGLLAG  300
ETFESYVWLL RAWLTCILGH PPQTIISDQC KALQAAIFDV FPRASHCINL TKVMRRISER  360
LEITYQYEAI KAAVYRAVCL SQRAEEFEAA WVDIIHEHGL EDHQWFQSLY EERNRWVPVY  420
LKETFLAGMF TIQQNEDSTS FFKGYIGNCT SLKEFLDKYD QAMQRSHQLE ALADLDSRNS  480
SCMLNSRCNY ELQLSKLYTG YIFMKFQKEV EGMYSCFSTR QVNVDGLVTT YTVQEHVELE  540
DGRREARDFE VLFNGSEMEV FCACGLFNLR GYLCRHALHV LSQNRVEEVP PQYVLSRWRK  600
DIKRGYVLDQ RSAGIDIDNP VHRHEHLHKC ILQVMDEARK SQDRSKVALQ ALDEMLNKIQ  660
LSKDHPE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033973.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A059AIH50.0A0A059AIH5_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010033973.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6