PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC006223.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 673aa    MW: 77185.8 Da    PI: 8.1895
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC006223.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.81.3e-2166149189
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                   ++Yn YAke+GF+vr+++s  +++++e + + ++Cs +g+++ ++ +     r r+etrtgC a++++++ ++++w+v ++ leHnH l
  EcC006223.60  66 NYYNCYAKEAGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRVLEVTLEHNHLL 149
                   69*****************************************9988.....99*********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.6E-1966149IPR004330FAR1 DNA binding domain
PfamPF105519.2E-30268361IPR018289MULE transposase domain
PROSITE profilePS509669.841555591IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6566593IPR006564Zinc finger, PMZ-type
PfamPF044345.8E-4567587IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000077Biological ProcessDNA damage checkpoint
GO:0006281Biological ProcessDNA repair
GO:0005730Cellular Componentnucleolus
GO:0030896Cellular Componentcheckpoint clamp complex
GO:0003824Molecular Functioncatalytic activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
HHFISQMEDA PLPSEQGNDG ECSTSQIGPD GIAAASDDQN GASVGRKEFV APAVGMEFES  60
YDDAYNYYNC YAKEAGFRVR VKNSWFKRNS REKYGAVLCC SSQGFKRIKD VNRLRKETRT  120
GCPAMIRMRL VDSKRWRVLE VTLEHNHLLG LKSYRTIKKM SAGTKRKSQS SADAEERTIK  180
LYRALVIDAG GNGNQSCGEN EARSLSDHLN HLNLKKGDTQ AIYNYFCRMQ LTNPNFYYLM  240
DLTDEGNLRN VFWADARSRA ACVYFGDVIY FDTTFLSNKY EVPLVAFVGA NHHGQSVLLG  300
CGLLAGETME SYTWVFKAWS SCMSGCSPQT ITTDRCKILR GAIEEVFPRC HHRFGLSHIM  360
RKVPEKLGGL NNYDAIRRAL TKAVYEFLKV SEFETAWGIM VQRFGIGDHE WLRALYEDRV  420
IWAPVYLKDT FFAGMSSARP GESLNAFFDK YVHKQTPLKE FLDKYELALQ KKHREEALAD  480
NESRNASYGL KTRCSFELQL SKVYTRDIFR KFQFEVEEMY SCLSTTQLYV DGPVIIFLVK  540
ERVLGEGSRR EIRDYEVLYN RAAAEVRCIC SCFNFYGYLC RHALCVLNFN GVEEIPSKYI  600
LPRWKKDYKR LHIPDPGPGE AGAAERVQWL NQLYRSALQI VEEGVISPEH YRAALQTFED  660
ALNRVHQVEE KKE
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010033975.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A2N9G4Y60.0A0A2N9G4Y6_FAGSY; Uncharacterized protein
STRINGXP_010033975.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107882531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]