PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC006588.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 629aa MW: 72142.9 Da PI: 6.8228

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC006588.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.6	1.2e-19	72	157	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrt.fvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YAk++GF+vr+ k+++s+ n+ i++++ f Cs++gk +e+ ++ +r trtgC+ak+k + dg+w+++k++leHnH+ EcC006588.20 72 DFYCSYAKQTGFKVRRGKTEYSRSNKAIVRAKyFLCSCQGKCKEQITN--AMWYKRRDTRTGCDAKIKCVVD-DGTWKISKVVLEHNHA 157 6*******************9998887655279*****9988..8889999********999.*************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-16	72	157	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.0E-14	247	338	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.039	530	568	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.1E-4	543	570	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence Send to blast
MADVMDICLS KDHVLEVPTV SLEHGSNHLS VYSIHRSKQR SSAAEAWPSS GPSLGMVPRV 60 GMEFDSEVAL YDFYCSYAKQ TGFKVRRGKT EYSRSNKAIV RAKYFLCSCQ GKCKEQITNA 120 MWYKRRDTRT GCDAKIKCVV DDGTWKISKV VLEHNHATTA LLRGRITDEV KVVGERALVS 180 DVDHTRKNWP RPAPEEIQDL IDHFKCLARL DCCSYYSLRV AEAGGMENFF WRDARSKFDY 240 EHFSDLLVLD TTTWIHKYGM ICAIFWGLNH HRQPTIFGQS LLLARTVGSF HWLLDTFLES 300 MNWRKPQTII TEVSEETAEA VSLVLPESSH CLPAWSILNS FKKYLSPLSE QLHVVNLFKE 360 CVFLHSREEF ESKWNSFIGK YKLHDNSWLA SLYKMHEKWS HAFTKYVFSA DLLSIQNDED 420 AGHIVGNLSS ETMTLTEIAC RCEQVAKKLC GEEFCEDMLC EKNMGKLVST SPLEKEAERL 480 YTRMMIKIFQ EELINCLCLV IKEIECTETL RMFHLTEVGS RKTQTVSSQK TLTVKFDPSD 540 LTLACSCGKF ESVGILCFHA LKVLNFMNIF EIPSRYLLKR WTKSAKDSMP VDTPSSGTAH 600 DLFMDPDFND DMDGIICEYA LENNLIKRM

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence Send to blast

MADVMDICLS KDHVLEVPTV SLEHGSNHLS VYSIHRSKQR SSAAEAWPSS GPSLGMVPRV  60
GMEFDSEVAL YDFYCSYAKQ TGFKVRRGKT EYSRSNKAIV RAKYFLCSCQ GKCKEQITNA  120
MWYKRRDTRT GCDAKIKCVV DDGTWKISKV VLEHNHATTA LLRGRITDEV KVVGERALVS  180
DVDHTRKNWP RPAPEEIQDL IDHFKCLARL DCCSYYSLRV AEAGGMENFF WRDARSKFDY  240
EHFSDLLVLD TTTWIHKYGM ICAIFWGLNH HRQPTIFGQS LLLARTVGSF HWLLDTFLES  300
MNWRKPQTII TEVSEETAEA VSLVLPESSH CLPAWSILNS FKKYLSPLSE QLHVVNLFKE  360
CVFLHSREEF ESKWNSFIGK YKLHDNSWLA SLYKMHEKWS HAFTKYVFSA DLLSIQNDED  420
AGHIVGNLSS ETMTLTEIAC RCEQVAKKLC GEEFCEDMLC EKNMGKLVST SPLEKEAERL  480
YTRMMIKIFQ EELINCLCLV IKEIECTETL RMFHLTEVGS RKTQTVSSQK TLTVKFDPSD  540
LTLACSCGKF ESVGILCFHA LKVLNFMNIF EIPSRYLLKR WTKSAKDSMP VDTPSSGTAH  600
DLFMDPDFND DMDGIICEYA LENNLIKRM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018720151.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A059D3A4	0.0	A0A059D3A4_EUCGR; Uncharacterized protein
STRING	XP_010046590.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	3e-70	FAR1-related sequence 7