PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC006970.50

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 196aa MW: 22460.8 Da PI: 9.6418

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC006970.50	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.3	2.3e-12	85	191	2	96
EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE- CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkld 85 +k lt+sd + ++rl + ++f+++h + ++ ++ +++++d + + ++ + ++ +sg+yvl++GW keFvk gL +gD v ++ EcC006970.50 85 KKRLTQSDLGHLSRLLIGRDFVKSHflrwmneetvrQVESSKGADVIVRDMDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAVGDEVGIYW- 180 5889**********************98888877444457788999996666778888888*********999*********999995. PP SS.SEE..EEEE CS B3 86 gr.sefelvvkv 96 + s ++++++ EcC006970.50 181 -EpSASKFHFSL 191 .44555457666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.35E-15	83	192	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0061	84	195	IPR003340	B3 DNA binding domain
CDD	cd10017	7.94E-18	84	192	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.3E-15	85	192	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.9E-9	86	190	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
VVASREFFLL VPDQNTKEVG HPRQEIVPAQ LKRKSMASIA DPETFIVEKT KKYKRTQRGK 60 EEASGCDAEE VSTELTLLFD PYKIKKRLTQ SDLGHLSRLL IGRDFVKSHF LRWMNEETVR 120 QVESSKGADV IVRDMDTCSE HRLVFVFWAS SGSYVLKGGW IKEFVKRRGL AVGDEVGIYW 180 EPSASKFHFS LLHKAN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010041071.2	1e-126	PREDICTED: uncharacterized protein LOC104429979
TrEMBL	A0A059C5A2	1e-138	A0A059C5A2_EUCGR; Uncharacterized protein
STRING	XP_010041071.1	1e-137	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM456	9	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	2e-30	B3 family protein