PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC007220.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 289aa    MW: 32401.4 Da    PI: 8.7885
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC007220.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-194090155
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  s++ GVr+++ +g+WvAeI+d +   ++ r +lg+f+taeeAa+a+++a+  l+g
  EcC007220.10 40 SKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFDTAEEAARAYDEAACLLRG 90
                  79********.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-204099IPR016177DNA-binding domain
PfamPF008472.9E-134090IPR001471AP2/ERF domain
CDDcd000182.92E-324097No hitNo description
SMARTSM003801.0E-3641104IPR001471AP2/ERF domain
PROSITE profilePS5103219.774198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-274198IPR001471AP2/ERF domain
PRINTSPR003673.8E-84253IPR001471AP2/ERF domain
PRINTSPR003673.8E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEIQFQRHDT YHHPQPQQKP LSPIRKTKFK STPSNITAKS KFVGVRQRPS GKWVAEIKDT  60
TQKIRMWLGT FDTAEEAARA YDEAACLLRG FNTRTNFSPH LPTSSALSLK IRTLLNQKIS  120
SRRDRPMVSH SNSKSTKKPA SQTNSATSIC SMISLSSVTN VYTSSDSDCS FSSGMMQDGR  180
IFDDAYRPDL SRCLASLGST PMSQHNHSWA FPSGLDHLPL VQEDGLPKHG PCASTTDLEL  240
SEFERMKVER QISASLYAVN GLNEYLENTY NSNETMWDIP ALSQLFCHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-15401001373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044941.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11
TrEMBLA0A059D8K70.0A0A059D8K7_EUCGR; Uncharacterized protein
STRINGXP_010044941.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-49related to AP2 11