PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC007322.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family FAR1
Protein Properties Length: 434aa    MW: 50689.5 Da    PI: 7.3969
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC007322.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.71.1e-1926109390
          FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                   Y +YA + GF vrk ++ k+ r+geit+rtf C++eg++ +++++  +++ +r e r+gC a++k k + +g +ev++ ++eHnH+++
  EcC007322.40  26 YVAYAIDKGFGVRKGHTVKN-RKGEITRRTFLCNCEGHSVTSSDQ--EKKFERLEVRCGCLAHIKFKVD-NGIYEVIEYVSEHNHAFV 109
                   99**************9999.7788**************999877..9999*****************9.***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-1726109IPR004330FAR1 DNA binding domain
PfamPF105511.4E-29225319IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0015914Biological Processphospholipid transport
GO:0016021Cellular Componentintegral component of membrane
GO:0000287Molecular Functionmagnesium ion binding
GO:0003676Molecular Functionnucleic acid binding
GO:0004012Molecular Functionphospholipid-translocating ATPase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MRDMENDFEF AIGMVFSNEL EAYHKYVAYA IDKGFGVRKG HTVKNRKGEI TRRTFLCNCE  60
GHSVTSSDQE KKFERLEVRC GCLAHIKFKV DNGIYEVIEY VSEHNHAFVS EDQKHLIRCG  120
KMISDTVVID IIKAGIGGTT TRKSLANEAG GGSKNLGLCQ NLLQTESNKD IDGRDYQNLL  180
NHFHCMQMQN PMFFYAVQVD QDGRLINLFW RDSLSKFDYD CFGDVLVFDS TYRINRNNLI  240
CAPFVGVNHH WKNTLFGCAF LLDEAVESFI WLFGVFLESM GNKASKTIFT DQNQAMAKAI  300
RRVFPNTQHR LCPWHIIKNA NQNIPQLFHK SGFRDKYFLR LMYRCKSEDE FESTWMEMEE  360
EWATQNNNWL QRLYGLRHKW SSAFGRDIFS CDIWSSQRSE STNNVFQHIS KKTSSLVQLV  420
HYYEEQLKHM RETE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018721416.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X3
TrEMBLA0A059CXY90.0A0A059CXY9_EUCGR; Uncharacterized protein
STRINGXP_010025987.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-72FAR1-related sequence 5