PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC007367.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 711aa MW: 79720.4 Da PI: 8.4312

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC007367.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	94.5	1.3e-29	77	164	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA+++GF +r+s ++s+r+g++++r+ vCs+eg+r+ + ++++r+r++tr+gCka+++vkk+++gkw v+k+++eHnHel+ EcC007367.30 77 FYNSYARRIGFGTRVSVYQRSRRDGSVVCRQVVCSREGFRRGGGEG-KSKKRRRTVTRVGCKAQMTVKKRSSGKWAVSKFVEEHNHELV 164 9***************************************9999.9999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-26	77	164	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-26	286	376	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.769	568	602	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.5E-9	575	599	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-7	577	604	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006096	Biological Process	glycolytic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0003872	Molecular Function	6-phosphofructokinase activity
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence Send to blast
MDFEPVSIGN DVVEFEVGED GGAGTGTGVG LCSGRRGGPS ERPASSGAGD SSGSDGDPSL 60 EPCEGMEFDS EQAARIFYNS YARRIGFGTR VSVYQRSRRD GSVVCRQVVC SREGFRRGGG 120 EGKSKKRRRT VTRVGCKAQM TVKKRSSGKW AVSKFVEEHN HELVSPDKVH CLRSHRHVPG 180 PARSLIDTLQ AAGMGPSGVM SVLIKESGGV NNVGFTKIDC QNYMSSSRQR TLGSGGQLVL 240 DYLKQRQAAD PGFFCAVQGD FDNLAGNIFW ADANSRKNYA YFGDTVNFDT SYRMNRCRVP 300 FAPFTGWNHH GQPVLFGCAF LLNEAESSFI WLFQTWLDAM SGSHPVSITT DQDGIIRSAV 360 AQVLPGTRHR FCRWNVFRAA QEKLSDVYCS NPNFETEFQK CVNVPKTIED FELCWESLLE 420 RCGLRNNEWL QLMYNARQKW VPVFLRDTFF GEMSMMQGKD SINSYFDGYI NASTSIQVLI 480 RQYEKAIACR HEKEIKSDYE TLNTAPVLKT PSPMEKQAAN VYTRKIFKKF QEELVETLAY 540 PATIIKDMES EAVYRVAKFG EDHKANFVKV DVFRKKACCS CQMFEFSGIM CRHILAVFRV 600 MNVLTLPPDY ILKRWTRNAK SESLLDDYMV GFTSNPQESF TARYENLRIK AIKYVEDGAE 660 SIHSYTVAMD ALQIAAEKVA ASKKHGFGLK QKTLIHGCQS QSRCTVGSET F

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence Send to blast

MDFEPVSIGN DVVEFEVGED GGAGTGTGVG LCSGRRGGPS ERPASSGAGD SSGSDGDPSL  60
EPCEGMEFDS EQAARIFYNS YARRIGFGTR VSVYQRSRRD GSVVCRQVVC SREGFRRGGG  120
EGKSKKRRRT VTRVGCKAQM TVKKRSSGKW AVSKFVEEHN HELVSPDKVH CLRSHRHVPG  180
PARSLIDTLQ AAGMGPSGVM SVLIKESGGV NNVGFTKIDC QNYMSSSRQR TLGSGGQLVL  240
DYLKQRQAAD PGFFCAVQGD FDNLAGNIFW ADANSRKNYA YFGDTVNFDT SYRMNRCRVP  300
FAPFTGWNHH GQPVLFGCAF LLNEAESSFI WLFQTWLDAM SGSHPVSITT DQDGIIRSAV  360
AQVLPGTRHR FCRWNVFRAA QEKLSDVYCS NPNFETEFQK CVNVPKTIED FELCWESLLE  420
RCGLRNNEWL QLMYNARQKW VPVFLRDTFF GEMSMMQGKD SINSYFDGYI NASTSIQVLI  480
RQYEKAIACR HEKEIKSDYE TLNTAPVLKT PSPMEKQAAN VYTRKIFKKF QEELVETLAY  540
PATIIKDMES EAVYRVAKFG EDHKANFVKV DVFRKKACCS CQMFEFSGIM CRHILAVFRV  600
MNVLTLPPDY ILKRWTRNAK SESLLDDYMV GFTSNPQESF TARYENLRIK AIKYVEDGAE  660
SIHSYTVAMD ALQIAAEKVA ASKKHGFGLK QKTLIHGCQS QSRCTVGSET F

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010063175.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A059BWK5	0.0	A0A059BWK5_EUCGR; Uncharacterized protein
STRING	XP_010063175.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]