PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC007544.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 139aa    MW: 15754 Da    PI: 9.4585
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC007544.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.13.2e-1327918100
                   --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
            B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                   +pkkf+ ++g++   s  + le + + +W++ +   ++s +++l kGW+eF +   +  g  vvFk++g+s+f  +v++f+ks
  EcC007544.20   2 IPKKFLGRYGKD--LSSLVLLEVLGSSTWSMGVEKLNNS-TVWLWKGWQEFMRHYSIGHGHLVVFKYKGNSTF--RVMIFDKS 79 
                   9********977..777999999**********544444.599**************************9999..9***9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.253179IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-17279IPR015300DNA-binding pseudobarrel domain
CDDcd100173.03E-8277No hitNo description
PfamPF023622.0E-10278IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-17279IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
GIPKKFLGRY GKDLSSLVLL EVLGSSTWSM GVEKLNNSTV WLWKGWQEFM RHYSIGHGHL  60
VVFKYKGNST FRVMIFDKSA SEIDYSLSSI SNLGSGFILP KREDVIEVED SEDFAPCQKK  120
GSTRIHHVLS RVQAAHHQI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065665.12e-65PREDICTED: B3 domain-containing transcription factor VRN1 isoform X5
RefseqXP_010065666.13e-66PREDICTED: B3 domain-containing transcription factor VRN1 isoform X6
TrEMBLA0A059BB473e-64A0A059BB47_EUCGR; Uncharacterized protein
STRINGXP_010065661.13e-63(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-16B3 family protein