PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC007564.60

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 472aa MW: 52393.7 Da PI: 5.9415

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC007564.60	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00086	124	144	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 Cp+C++sF++ ++ H ++ EcC007564.60 124 CPICNRSFRSEEEVSEHVDSC 144 ************999998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	1.8E-7	26	53	No hit	No description
SMART	SM00734	1.1E-4	121	145	IPR006642	Zinc finger, Rad18-type putative
CDD	cd09212	1.25E-20	174	269	No hit	No description
SuperFamily	SSF143503	2.35E-18	187	268	IPR018997	PUB domain
SMART	SM00580	1.8E-19	187	251	IPR018997	PUB domain
Pfam	PF09409	1.6E-15	188	261	IPR018997	PUB domain
SuperFamily	SSF54236	1.6E-11	334	447	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	1.8E-7	351	444	No hit	No description
PROSITE profile	PS50033	9.174	363	447	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0006281	Biological Process	DNA repair
GO:0050832	Biological Process	defense response to fungus
GO:0003677	Molecular Function	DNA binding
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MDDVKDKVKG FMKKVNNPFS GASSTGKFKG QGRVLGSSSS GSTNPIPAHP PQSVQSQPNP 60 PPPQVSNPRP SQPPKAAVPD RGKLGSARNA EPDRKPVNGF DPFGSLITTG KRSQNGYSLN 120 IVDCPICNRS FRSEEEVSEH VDSCVAESRV EYDNEVGAQG LPSDEAEGRS ELEACVGTFV 180 SAKPPESSVD VVLKLFRNIA REPENAKFRR VRMGNPKIKE AIGDVAGGVE LLEFVGFELK 240 EEDGEMWAMM DQPGEEQIRL VNRAVVLLEP KKFEESKKID DAPAVVPSVV DKPMEKEKID 300 RQIRVFFSVP ENIAAKIELP ASFYNLSMDE VRREAEMRKK KMAESQLLIP KSYREKQLKA 360 GRKRYTRTIL RVQFPDGVVL QGVFAPWELT GSLYEFVSSA LKDPCLEFEL MHPVLIKRRV 420 IPHSPEPGQR ATTLDDEDLV PSALIKFRPI ETDSAVFTGL RNELLEISEP LQ

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MDDVKDKVKG FMKKVNNPFS GASSTGKFKG QGRVLGSSSS GSTNPIPAHP PQSVQSQPNP  60
PPPQVSNPRP SQPPKAAVPD RGKLGSARNA EPDRKPVNGF DPFGSLITTG KRSQNGYSLN  120
IVDCPICNRS FRSEEEVSEH VDSCVAESRV EYDNEVGAQG LPSDEAEGRS ELEACVGTFV  180
SAKPPESSVD VVLKLFRNIA REPENAKFRR VRMGNPKIKE AIGDVAGGVE LLEFVGFELK  240
EEDGEMWAMM DQPGEEQIRL VNRAVVLLEP KKFEESKKID DAPAVVPSVV DKPMEKEKID  300
RQIRVFFSVP ENIAAKIELP ASFYNLSMDE VRREAEMRKK KMAESQLLIP KSYREKQLKA  360
GRKRYTRTIL RVQFPDGVVL QGVFAPWELT GSLYEFVSSA LKDPCLEFEL MHPVLIKRRV  420
IPHSPEPGQR ATTLDDEDLV PSALIKFRPI ETDSAVFTGL RNELLEISEP LQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifs_A	2e-15	314	447	19	146	Tether containing UBX domain for GLUT4
5ifs_C	2e-15	314	447	19	146	Tether containing UBX domain for GLUT4
5ifw_A	9e-16	318	447	23	146	Tether containing UBX domain for GLUT4
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Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010066580.1	0.0	PREDICTED: plant UBX domain-containing protein 2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A059BE78	0.0	A0A059BE78_EUCGR; Uncharacterized protein
STRING	XP_010066580.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9835	16	18

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]