PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC007630.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 361aa    MW: 39877.3 Da    PI: 7.3255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC007630.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000312262641255
                   HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  EcC007630.30 226 RKEKLGDRITALHQLVSPF-----GKTDTASVLAEAIGYIRFLQ 264
                   6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.877214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-10224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-6224268No hitNo description
Gene3DG3DSA:4.10.280.103.1E-8228270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009116Biological Processnucleoside metabolic process
GO:0003824Molecular Functioncatalytic activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MHRVLQSSSP VQQQMMANPN SWWNINSLRA PSPQQATSST FFPNIPPYHH SNLFPQYMPT  60
NPSSALAASW LENSSQEHQQ LQAESWSQLL LGGLVSEEDK NTLTQFQAKR LENWGDQQVL  120
EQSPVDVKQE NSSSSYLYGH ATREDFHGSK SAVWPTTTLT PAASPPKSCV TSFSSNLLDF  180
SYKKSDGNKH PVPDQSSECK SSATGGAQKK ARTQPSSAQS TTFKVRKEKL GDRITALHQL  240
VSPFGKTDTA SVLAEAIGYI RFLQNQIEAL SLPYLGNGSG NMRHQQPVQR ERNCIFPEDP  300
GQLLNDNCMK RKGALDQDTN HEEGKDLRSR GLCLVPIQCT MQVGNETGAD YWAPAIGGGF  360
H
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049661.10.0PREDICTED: transcription factor bHLH68
SwissprotQ8S3D12e-87BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A059CVK90.0A0A059CVK9_EUCGR; Uncharacterized protein
STRINGXP_010049661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-88bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]