PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC007862.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 135aa    MW: 15910.5 Da    PI: 10.5551
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC007862.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.66.8e-141966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +lv ++ ++G  +W+  a+  g+ Rt+k+c++rw +yl
     EcC007862.60 19 KGAWSADEDRKLVAYIMRYGIWNWTHMAEPAGLARTGKSCRLRWMNYL 66
                     79******************99************************97 PP
2Myb_DNA-binding56.66.1e-1873117248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g+ T+eE+e+++++++ lG++ W+tIa++++ gRt++++k++w+++l
     EcC007862.60  73 GNITKEEEEIIINLHRVLGKR-WATIASRLP-GRTDNEIKNYWNTHL 117
                      678******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0741466IPR017930Myb domain
SuperFamilySSF466899.8E-2917113IPR009057Homeodomain-like
SMARTSM007171.6E-91868IPR001005SANT/Myb domain
PfamPF002492.6E-121966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-222073IPR009057Homeodomain-like
CDDcd001676.44E-82166No hitNo description
PROSITE profilePS5129425.767121IPR017930Myb domain
SMARTSM007178.1E-1771119IPR001005SANT/Myb domain
PfamPF002492.0E-1573117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2674120IPR009057Homeodomain-like
CDDcd001676.69E-785117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MARYPRVDKI SNGKKTVKKG AWSADEDRKL VAYIMRYGIW NWTHMAEPAG LARTGKSCRL  60
RWMNYLRPDI KHGNITKEEE EIIINLHRVL GKRWATIASR LPGRTDNEIK NYWNTHLKKR  120
YAQEKLEMPI ACDVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29191207107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
UniProtTranscription factor involved in salt stress response. Confers tolerance to salt stress (PubMed:22575450). Involved in distinct cellular processes in response to osmotic stress, including control of primary metabolism and negative regulation of short-term transcriptional responses to osmotic stress (PubMed:19211694). Can activate the steps necessary for aliphatic suberin synthesis and deposition of cell wall-associated suberin-like lamellae. Involved in the production of aliphatic suberin under abiotic stress conditions (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:22575450, ECO:0000269|PubMed:25060192}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
UniProtINDUCTION: Induced by salt stress (PubMed:19211694, PubMed:25060192). Induced by osmotic stress (PubMed:19211694). Induced by abscisic acid (PubMed:25060192). {ECO:0000269|PubMed:19211694, ECO:0000269|PubMed:25060192}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030549.11e-86PREDICTED: transcription factor MYB23
SwissprotQ7XBH41e-46MYB4_ORYSJ; Transcription factor MYB4
SwissprotQ9M0J53e-46MYB41_ARATH; Transcription factor MYB41
TrEMBLA0A059AM793e-85A0A059AM79_EUCGR; Uncharacterized protein
STRINGXP_010030549.14e-86(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.19e-44myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]