PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC008120.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 23937.3 Da    PI: 9.2262
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC008120.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.4e-311059251
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  rien++ rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+lye+ss
  EcC008120.20 10 RIENTTSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 59
                  8***********************************************96 PP
2K-box75.71.2e-25861711297
         K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                   +   +l+qe + ++++ie L+ ++R+l Ge+L+s+s+ e+q + +qLe+sl++iR++K +l+ +qi++lq ke++l+een +L +k
  EcC008120.20  86 QCILHLKQETTDMERKIELLEVSLRKLSGECLGSCSIDEIQMIGDQLERSLSSIRARKAQLFDDQIQHLQAKERSLKEENAKLLAK 171
                   556689*****************************************************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.898161IPR002100Transcription factor, MADS-box
SMARTSM004325.9E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.61E-40276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-31323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-32382IPR002100Transcription factor, MADS-box
PfamPF003192.0E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.94788178IPR002487Transcription factor, K-box
PfamPF014866.2E-2390172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MARGKIQLRR IENTTSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KGRLYEFSSN  60
SEIQKTIDRY RRSTYDMDTY KTNLDQCILH LKQETTDMER KIELLEVSLR KLSGECLGSC  120
SIDEIQMIGD QLERSLSSIR ARKAQLFDDQ IQHLQAKERS LKEENAKLLA KCLANPGQST  180
AHPRAAALHS RSSRSTDVET GLFIGLPELN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-18170169MEF2C
5f28_B5e-18170169MEF2C
5f28_C5e-18170169MEF2C
5f28_D5e-18170169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001289659.11e-153MADS-box protein SOC1-like
SwissprotQ9FIS13e-72AGL42_ARATH; MADS-box protein AGL42
TrEMBLQ84LP01e-151Q84LP0_EUCGR; SOC1-like floral activator MADS4
STRINGXP_010035077.11e-152(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-74AGAMOUS-like 42