PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC008121.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Nin-like
Protein Properties Length: 100aa    MW: 11670.9 Da    PI: 10.7634
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC008121.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK64.91.3e-201861649
        RWP-RK  6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49
                  +l d+  yF+lpi++A+  L +c+Tv+K+iCR+ G+ RWP+Rk+
  EcC008121.10 18 TLADVGGYFHLPIEKASERLHLCPTVVKKICRKGGVGRWPYRKV 61
                  6889999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151912.969485IPR003035RWP-RK domain
PfamPF020428.4E-181861IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
GCIYVLRLVQ RERAEKRTLA DVGGYFHLPI EKASERLHLC PTVVKKICRK GGVGRWPYRK  60
VTLPFVSLSS RIEICPSKIF HLSQILVFCR FNVLRERSWN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718902.17e-29PREDICTED: protein RKD5 isoform X2
TrEMBLA0A059AAH12e-27A0A059AAH1_EUCGR; Uncharacterized protein
STRINGXP_010050417.11e-35(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.18e-10Nin-like family protein