PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC008259.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 87aa MW: 9257.73 Da PI: 8.6795

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC008259.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	67.1	4.1e-21	38	83	1	46
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46 +CaaCk+lrr+C+++Cvlapyfp ++p+kfa++h++FGasn++k+l EcC008259.10 38 PCAACKTLRRRCSESCVLAPYFPPSEPAKFAIAHRVFGASNIVKFL 83 7*******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.766	37	87	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.1E-20	38	83	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MESSDTGAFE SSPTSSLVPP SWSSPTPALP LPVVVASPCA ACKTLRRRCS ESCVLAPYFP 60 PSEPAKFAIA HRVFGASNIV KFLLVRH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-17	36	83	9	56	LOB family transfactor Ramosa2.1
5ly0_B	1e-17	36	83	9	56	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056894.1	4e-52	PREDICTED: LOB domain-containing protein 1
Swissprot	Q9LQR0	9e-26	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A059C5R1	2e-50	A0A059C5R1_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010056894.1	2e-51	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-22	LOB domain-containing protein 1