PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC008330.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 304aa    MW: 32992.6 Da    PI: 5.941
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC008330.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.2e-16215251135
          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  EcC008330.10 215 CQHCGVSEnaTPAMRRGPAGPRTLCNACGLMWANKGT 251
                   **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.6E-875110IPR010399Tify domain
PROSITE profilePS5132013.33975110IPR010399Tify domain
PfamPF062001.6E-1078109IPR010399Tify domain
PROSITE profilePS5101712.679143185IPR010402CCT domain
PfamPF062039.0E-15143184IPR010402CCT domain
PROSITE profilePS501148.932209268IPR000679Zinc finger, GATA-type
SMARTSM004013.0E-9209262IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-11210259No hitNo description
Gene3DG3DSA:3.30.50.106.7E-15213256IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.37E-16214258No hitNo description
PfamPF003203.1E-14215251IPR000679Zinc finger, GATA-type
PROSITE patternPS003440215242IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MASADPEHLQ ARGPTRAEDD DDDEELENGG GGGTDDFADE VEEAGRGYVD SVGDYEHRRR  60
RGSSAGVGAG GGGVAPSRTS ELTLSFEGEV YVFPDVSHEK VQAVLLLLGG RDIPTAVPTF  120
EVPYAQSTMD VVDMSKRSNL SRRIASLVRF REKRKERCFD KKIRYTVRKE VAQRMHRKNG  180
QFASIKEGSG AGSLDLAQSC HQDGTPPPET VARRCQHCGV SENATPAMRR GPAGPRTLCN  240
ACGLMWANKG TLRDLSKGGR NLSLDQTELG TPDVKPLIID GQHFSSNKDD LVSFIQTTQS  300
QLEA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060108.10.0PREDICTED: GATA transcription factor 18 isoform X1
RefseqXP_010060110.10.0PREDICTED: GATA transcription factor 18 isoform X3
SwissprotQ5Z4U51e-62GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A059BLS00.0A0A059BLS0_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010060108.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-64ZIM-like 1