PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC008381.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family CPP
Protein Properties Length: 147aa    MW: 16330.6 Da    PI: 7.9117
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC008381.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR42.31.5e-131249340
           TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                  +k+C+C++skCl+++CeC+aa+ +C+++C C  C N+ 
  EcC008381.10 12 TKRCSCRRSKCLQLFCECYAAELFCTDSCACRLCYNNL 49
                  799*********************************86 PP
2TCR49.11.1e-15104141138
           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 
                   ++k+gCnCkks+Clk+YCeC++ ++ C +eC+CedC+N
  EcC008381.10 104 RHKRGCNCKKSQCLKNYCECYQGKAGCFHECNCEDCSN 141
                   589**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011144.4E-101051IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.29411144IPR005172CRC domain
PfamPF036382.2E-101348IPR005172CRC domain
SMARTSM011148.8E-14104145IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.3E-11106141IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
KKAENATEKG STKRCSCRRS KCLQLFCECY AAELFCTDSC ACRLCYNNLE MEDSVFKAKD  60
RIKCGDPLAF GPKVVPHPND LPPDKVESGG RGSGESEDTP LFVRHKRGCN CKKSQCLKNY  120
CECYQGKAGC FHECNCEDCS NPFGPKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-121314112120Protein lin-54 homolog
5fd3_B4e-121314112120Protein lin-54 homolog
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018717839.18e-87PREDICTED: protein tesmin/TSO1-like CXC 2
TrEMBLA0A2I4F7G65e-39A0A2I4F7G6_JUGRE; uncharacterized protein LOC108996265
STRINGXP_010030274.11e-85(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15696813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.12e-37Tesmin/TSO1-like CXC domain-containing protein