PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC008393.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 231aa    MW: 26606.1 Da    PI: 6.3969
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC008393.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.31.9e-42121431128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   lppGfrF+ tdeel+ +yLk+k+ g++  +  ++i+e+d++++ePw+Lp+   +  + ke++fF++ ++ky +++r+nr+tk+gyWk tg+  +++s
  EcC008393.20  12 LPPGFRFQATDEELLLDYLKPKILGQPdGRHYDMIPEIDVLEFEPWQLPSlfGHMFSGKELFFFCHLKRKYLNSNRSNRTTKAGYWKPTGEVPTIMS 108
                   79*************************6344478***************5343334789************************************** PP

           NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   + +++++g++ktLvfy+gr pkg++t+ vmhey l
  EcC008393.20 109 EdTEAQIGIRKTLVFYEGRMPKGKRTNFVMHEYYL 143
                   977788***************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-459168IPR003441NAC domain
PROSITE profilePS5100546.69312168IPR003441NAC domain
PfamPF023651.2E-2113142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0004857Molecular Functionenzyme inhibitor activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MQNTISEVTQ SLPPGFRFQA TDEELLLDYL KPKILGQPDG RHYDMIPEID VLEFEPWQLP  60
SLFGHMFSGK ELFFFCHLKR KYLNSNRSNR TTKAGYWKPT GEVPTIMSED TEAQIGIRKT  120
LVFYEGRMPK GKRTNFVMHE YYLKSKCLGN SQDENEMLPY ALCRIKQKKD KKLMKGHAPT  180
ISPGGYSNSH CTDTSNVSET PMNQEGDYLS FCDNLHNEVA DNQEVVYAQP E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-3511696166NO APICAL MERISTEM PROTEIN
1ut4_B2e-3511696166NO APICAL MERISTEM PROTEIN
1ut7_A2e-3511696166NO APICAL MERISTEM PROTEIN
1ut7_B2e-3511696166NO APICAL MERISTEM PROTEIN
4dul_A2e-3511696166NAC domain-containing protein 19
4dul_B2e-3511696166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065025.11e-161PREDICTED: protein NTM1-like 9
TrEMBLA0A059DBY61e-159A0A059DBY6_EUCGR; Uncharacterized protein
STRINGXP_010065025.11e-160(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3405322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.15e-46NAC transcription factor-like 9