PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC008436.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

SRS

Protein Properties

Length: 209aa MW: 23305.1 Da PI: 8.1673

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC008436.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	182.4	1.9e-56	48	190	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100 +++CqdCGnqak+dC+++RCRtCCks+gf+C+thvkstWvpa++r +r+qq+++ ++ ++ +++r+ + ++ + t+ + + + EcC008436.10 48 SSSRCQDCGNQAKRDCEYRRCRTCCKSKGFHCQTHVKSTWVPAYRRHQRHQQEQQHQHL----LNSVPVHQQRSIQPQNPKRHRDTS---TFPGLGT 137 5679******************************************98887665333....344555555655333333333333...3344444 PP DUF702 101 etsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153 e +lP+evss+a frcvrvs dd + e++aYqt+v+igGh fkGiLydqG++ EcC008436.10 138 E-GNLPAEVSSTATFRCVRVSIEDDdAAEHYAYQTSVNIGGHAFKGILYDQGPD 190 4.56************9888845566********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.9E-55	49	190	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.8E-27	52	93	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.7E-23	141	189	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MSTLIVMQDG DQTLQRNAAM IPSMIGIEKD LRLSQMMMMR GQSGMSTSSS RCQDCGNQAK 60 RDCEYRRCRT CCKSKGFHCQ THVKSTWVPA YRRHQRHQQE QQHQHLLNSV PVHQQRSIQP 120 QNPKRHRDTS TFPGLGTEGN LPAEVSSTAT FRCVRVSIED DDAAEHYAYQ TSVNIGGHAF 180 KGILYDQGPD TCYGTAAGES SSGDPTALP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010028633.1	1e-130	PREDICTED: protein SHI RELATED SEQUENCE 3 isoform X1
Swissprot	Q9SJT8	9e-47	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
Swissprot	Q9XGX0	1e-46	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A059ANI6	1e-128	A0A059ANI6_EUCGR; Uncharacterized protein
STRING	XP_010028633.1	1e-129	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-44	SHI-related sequence 5

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]