PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC008702.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 483aa    MW: 52360.1 Da    PI: 7.8763
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC008702.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.96.4e-12290336455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    hn   rrR dri  ++  L+el+P++     +K +Ka+ L +A+eY+ksLq
  EcC008702.20 290 VHNLSGRRRGDRISRKMKALQELIPQC-----TKADKASLLDEAIEYLKSLQ 336
                   69999**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.48E-13283340No hitNo description
Gene3DG3DSA:4.10.280.101.5E-15284344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-15285363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.777286335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9289336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-12292341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0007026Biological Processnegative regulation of microtubule depolymerization
GO:0007067Biological Processmitotic nuclear division
GO:0016049Biological Processcell growth
GO:0043622Biological Processcortical microtubule organization
GO:0050821Biological Processprotein stabilization
GO:0005876Cellular Componentspindle microtubule
GO:0005886Cellular Componentplasma membrane
GO:0005938Cellular Componentcell cortex
GO:0009506Cellular Componentplasmodesma
GO:0009524Cellular Componentphragmoplast
GO:0003676Molecular Functionnucleic acid binding
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0046983Molecular Functionprotein dimerization activity
GO:0051010Molecular Functionmicrotubule plus-end binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
TSPVSTQHGT DDHFHPSRTY PRRRLRFLRV EDEIMELLWE DGRLVVQSQR PAMTRAAAIA  60
AGGGGGEVRQ GERRRRHRLF VQEDEVDSWL QYPFDVFNGG GFCSHLPRSP APCVTSSSDA  120
GCDFGTSDSG EVTSENAASA GSALVPKAAI GELSPSVSNE STAAEPKGTT HQASSGGVRG  180
HVRRERASGA AVDAPPGGGG GVGGEEGVAR DETMVASPPV GSATTGMGQL APAGAAPQVG  240
MQREKRKRKG RDAGDGEWLS DEKDVLFESA DAKERGAKST PAERSRRTNV HNLSGRRRGD  300
RISRKMKALQ ELIPQCTKAD KASLLDEAIE YLKSLQLQVQ IMSMGCSMVP VVFPGVQAYM  360
PCMNMGTATN VGMNPPTMLY PNILASSLMQ LSANGVHLSP GXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXGS FQQQQGLYYM  480
QQP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010069677.10.0PREDICTED: transcription factor PIF1
TrEMBLA0A059AXD31e-166A0A059AXD3_EUCGR; Uncharacterized protein
STRINGXP_010069677.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-36phytochrome interacting factor 3-like 5