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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | EcC008895.20 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 156aa MW: 17783.8 Da PI: 6.5426 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 25.1 | 4.2e-08 | 1 | 24 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48
W++Ia +++ gRt++++k++w+++l
EcC008895.20 1 WSLIAGRLQ-GRTANDIKNYWNTHL 24
*********.************996 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| CDD | cd00167 | 4.98E-5 | 1 | 24 | No hit | No description |
| PROSITE profile | PS51294 | 16.219 | 1 | 28 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 4.3E-10 | 1 | 24 | IPR009057 | Homeodomain-like |
| Pfam | PF00249 | 4.5E-6 | 1 | 24 | IPR001005 | SANT/Myb domain |
| SuperFamily | SSF46689 | 5.46E-6 | 1 | 31 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 156 aa Download sequence Send to blast |
WSLIAGRLQG RTANDIKNYW NTHLAKKVVY QKQKEDKPPW KFVTKVNIIR PQPRTFSKSS 60 VWINGNATQV ALRTPPGENL GQPSPILFHQ DKESAWWEDL LTESSPNEGL VTSTSGSEGQ 120 PGVKSWPREF AMDEGRNGWN ELSFDTDIWE FLDSNP |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018731301.1 | 1e-111 | PREDICTED: transcription factor MYB75 isoform X1 | ||||
| TrEMBL | A0A059BTP4 | 5e-40 | A0A059BTP4_EUCGR; Uncharacterized protein | ||||
| STRING | XP_010064838.1 | 1e-110 | (Eucalyptus grandis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G56650.1 | 2e-16 | production of anthocyanin pigment 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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