PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC008940.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SRS
Protein Properties Length: 219aa    MW: 24145.6 Da    PI: 7.8969
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC008940.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702182.22.2e-56121544153
        DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100
                    +++CqdCGnqak+dC+++RCRtCCks+gf+C+thvkstWvpa++r +r+qq+++ ++      ++   +++r+ + ++ +    t+   + +   +
  EcC008940.10  12 SSSRCQDCGNQAKRDCEYRRCRTCCKSKGFHCQTHVKSTWVPAYRRHQRHQQEQQHQHL----LNSVPVHQQRSIQPQNPKRHRDTS---TFPGLGT 101
                   5679********************************************98887665333....344555555655333333333333...3344444 PP

        DUF702 101 etsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153
                   e  +lP+evss+a frcvrvs  dd + e++aYqt+v+igGh fkGiLydqG++
  EcC008940.10 102 E-GNLPAEVSSTATFRCVRVSIEDDdAAEHYAYQTSVNIGGHAFKGILYDQGPD 154
                   4.56****************9888845566**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.3E-5513154IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.0E-271657IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.0E-23105153IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MMMRGQSGMS TSSSRCQDCG NQAKRDCEYR RCRTCCKSKG FHCQTHVKST WVPAYRRHQR  60
HQQEQQHQHL LNSVPVHQQR SIQPQNPKRH RDTSTFPGLG TEGNLPAEVS STATFRCVRV  120
SIEDDDAAEH YAYQTSVNIG GHAFKGILYD QGPDTCYGTA AGESSSGDPT ALPSNNDDNN  180
PAICTLASAS APQESIYPCS YPFPLSASIS GTHYIFPKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028633.11e-165PREDICTED: protein SHI RELATED SEQUENCE 3 isoform X1
TrEMBLA0A059ANI61e-163A0A059ANI6_EUCGR; Uncharacterized protein
STRINGXP_010028633.11e-164(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.15e-45SHI-related sequence 5