PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC008940.50

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

DBB

Protein Properties

Length: 195aa MW: 22004.3 Da PI: 5.4797

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC008940.50	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.7	1.8e-06	4	45	5	40
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++++e+ fC ++ lC+ C + H+ H++ EcC008940.50 4 QCDVCNREEAAVFCSADEAALCDGCDRHVHHAnklvsqHKRH 45 7****************************6444777776654 PP
2	zf-B_box	24	7.9e-08	56	93	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 + C+ ++e++ +fC++++ lC +C ++H++ Ht+ EcC008940.50 56 PLCDICQEQRGLIFCKEDRAILCTECDPSIHESneHTR 93 78*****************************8788986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.779	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	8.84E-5	3	33	No hit	No description
SMART	SM00336	2.7E-4	4	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.1E-10	53	100	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.025	53	100	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.6E-6	56	93	IPR000315	B-box-type zinc finger
CDD	cd00021	5.26E-6	56	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MKIQCDVCNR EEAAVFCSAD EAALCDGCDR HVHHANKLVS QHKRHSLIRH NFQEFPLCDI 60 CQEQRGLIFC KEDRAILCTE CDPSIHESNE HTRKHSRFLF TGVKISGSSS PCRTSSSSLT 120 NLDTSISTRT MESQSSYENG RSMEFLNSSH ADQDDDHMID TSSFSTSSIS EYFTKMLPGW 180 RVDDFLDSPS APIND

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269\|PubMed:22535582}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010030675.1	1e-122	PREDICTED: B-box zinc finger protein 20-like
Swissprot	Q0IGM7	1e-56	BBX20_ARATH; B-box zinc finger protein 20
TrEMBL	A0A2K2AVH0	2e-67	A0A2K2AVH0_POPTR; Uncharacterized protein
STRING	XP_010030675.1	1e-121	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39070.1	2e-53	DBB family protein

Publications ? help Back to Top
Wei CQ, et al. The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis. J Genet Genomics, 2016. 43(9): p. 555-563 [PMID:27523280] Thussagunpanit J, et al. Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin. Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301 [PMID:27858514]