PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC009296.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 320aa    MW: 34089.6 Da    PI: 6.1696
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC009296.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11169213554
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   h+++Er RR+riN+++  L+el+P++      K + a++L + v+Y+k L
  EcC009296.10 169 HSIAERLRRERINERMKALQELVPSC-----NKTDRAAMLDEIVDYVKFL 213
                   99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-17162223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.282164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-17166224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.05E-13168218No hitNo description
PfamPF000103.8E-9169213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-13170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MAGSNPQEGL GDEFFEQILA VPPGAYSGGS TPMVLQLGSG RGGVEDGGGR GGGGGLRGMG  60
VMMPLGLNLE QGGLFRHEDV ENSTSASSTT SAINMEREAG VHHGNNMTSC LFPAFGQFQA  120
HQSVQPPPPH PPPPQLHPAF LNQPAVGSPN QPAIRPRARA RRGQATDPHS IAERLRRERI  180
NERMKALQEL VPSCNKTDRA AMLDEIVDYV KFLRLQVKVL SMSRLGGAGA VAQLVADVPL  240
SSAEGEIIEG GNNQPAWEKW LTDGTEQQVA KLMEEDVGAA MQFLQSKTLC IMPISLASAI  300
FRTSQPDMPR SIKPESSAPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14754GGRGGGGG
2173178RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010025016.10.0PREDICTED: transcription factor UNE12 isoform X1
SwissprotO227685e-84UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A059B6S60.0A0A059B6S6_EUCGR; Uncharacterized protein
STRINGXP_010025016.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]