PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC009307.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MIKC_MADS

Protein Properties

Length: 151aa MW: 17422.1 Da PI: 8.6803

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC009307.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.1	2e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCda+v++i+fs tgkly++ss EcC009307.10 9 KKIDNLTARQVTFSKRRRGLIKKAEELSVLCDADVSLIVFSATGKLYDFSS 59 68***********************************************96 PP
2	K-box	33.3	2.1e-12	100	143	27	70
K-box 27 eienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 e+ +++R+++GedLe L+++eL qLe++Le +l+ + + K EcC009307.10 100 EVYDRAHKLRQMKGEDLEGLNVEELDQLEKKLEAGLSLVIKNKV 143 444455789****************************9977775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-36	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	29.072	1	61	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-26	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-30	3	85	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.2E-24	10	57	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.09E-31	12	75	No hit	No description
PRINTS	PR00404	4.0E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-26	38	59	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	8.22	87	151	IPR002487	Transcription factor, K-box
Pfam	PF01486	1.3E-8	95	142	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MAKEKIKIKK IDNLTARQVT FSKRRRGLIK KAEELSVLCD ADVSLIVFSA TGKLYDFSSS 60 RMEDTLTRYY GFHSNKVEKS VQPCLALEIE NTNREMLHEE VYDRAHKLRQ MKGEDLEGLN 120 VEELDQLEKK LEAGLSLVIK NKVSSLNIFH F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-17	1	73	1	73	MEF2C
5f28_B	1e-17	1	73	1	73	MEF2C
5f28_C	1e-17	1	73	1	73	MEF2C
5f28_D	1e-17	1	73	1	73	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061527.1	2e-99	PREDICTED: MADS-box protein JOINTLESS isoform X1
Refseq	XP_010061528.1	1e-99	PREDICTED: MADS-box protein JOINTLESS isoform X3
Refseq	XP_018732297.1	2e-99	PREDICTED: MADS-box protein JOINTLESS isoform X1
Refseq	XP_018732298.1	1e-99	PREDICTED: MADS-box protein JOINTLESS isoform X2
Swissprot	Q9FUY6	3e-56	JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBL	A0A059BQW4	4e-98	A0A059BQW4_EUCGR; Uncharacterized protein
TrEMBL	A0A059BRD2	3e-98	A0A059BRD2_EUCGR; Uncharacterized protein
STRING	XP_010061527.1	6e-99	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	2e-57	MIKC_MADS family protein

Publications ? help Back to Top
Nakano T,Kato H,Shima Y,Ito Y Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities. Plant Cell Physiol., 2015. 56(6): p. 1097-106 [PMID:25746985]