PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC009599.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 299aa    MW: 32052.5 Da    PI: 10.4546
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC009599.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-13109153347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r   ++Rt+ q+ s+ qky
     EcC009599.10 109 PWTEEEHRTFLVGLEKLGKGDWRGISRSYVTTRTPAQVASHAQKY 153
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.876102158IPR017930Myb domain
SuperFamilySSF466893.44E-17103159IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17105157IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.4E-10106152IPR009057Homeodomain-like
SMARTSM007177.9E-10106156IPR001005SANT/Myb domain
CDDcd001673.30E-9109154No hitNo description
PfamPF002493.2E-11109153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055085Biological Processtransmembrane transport
GO:0005743Cellular Componentmitochondrial inner membrane
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCTV TYSSSATVGF DSGGLRLFGV QLDISPCSSS LAIKKSFSMD  60
CLPFTSSPAS SSSLSSSRIS IGENSDKASL GYLSDGLLGR SQEKKKGVPW TEEEHRTFLV  120
GLEKLGKGDW RGISRSYVTT RTPAQVASHA QKYFLRQASF NKKKRRSSLF DMVDVKTAAG  180
DRLGSLTAKP SESVPNCKMG TLMSHLQVHD ARTTQLFTAL GSSKEDGKLN VQESVRMMTG  240
SSSHGLISSS QKPSNAPKSI GVLPNSGLDL ELKLAVSRPL ERKKPSIVAP FFVGPLAVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161165KKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049555.20.0PREDICTED: uncharacterized protein LOC104438169
SwissprotQ7XC578e-50MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A059CUS80.0A0A059CUS8_EUCGR; Uncharacterized protein
STRINGXP_010049555.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.15e-59MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]